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 chordal structure


Sparse Inverse Covariance Estimation for Chordal Structures

arXiv.org Machine Learning

In this paper, we consider the Graphical Lasso (GL), a popular optimization problem for learning the sparse representations of high-dimensional datasets, which is well-known to be computationally expensive for large-scale problems. Recently, we have shown that the sparsity pattern of the optimal solution of GL is equivalent to the one obtained from simply thresholding the sample covariance matrix, for sparse graphs under different conditions. We have also derived a closed-form solution that is optimal when the thresholded sample covariance matrix has an acyclic structure. As a major generalization of the previous result, in this paper we derive a closed-form solution for the GL for graphs with chordal structures. We show that the GL and thresholding equivalence conditions can significantly be simplified and are expected to hold for high-dimensional problems if the thresholded sample covariance matrix has a chordal structure. We then show that the GL and thresholding equivalence is enough to reduce the GL to a maximum determinant matrix completion problem and drive a recursive closed-form solution for the GL when the thresholded sample covariance matrix has a chordal structure. For large-scale problems with up to 450 million variables, the proposed method can solve the GL problem in less than 2 minutes, while the state-of-the-art methods converge in more than 2 hours.


Learning Inclusion-Optimal Chordal Graphs

arXiv.org Machine Learning

Chordal graphs can be used to encode dependency models that are representable by both directed acyclic and undirected graphs. This paper discusses a very simple and efficient algorithm to learn the chordal structure of a probabilistic model from data. The algorithm is a greedy hill-climbing search algorithm that uses the inclusion boundary neighborhood over chordal graphs. In the limit of a large sample size and under appropriate hypotheses on the scoring criterion, we prove that the algorithm will find a structure that is inclusion-optimal when the dependency model of the data-generating distribution can be represented exactly by an undirected graph. The algorithm is evaluated on simulated datasets.